
=========================================
The start-up time of CASA may vary
depending on whether the shared libraries
are cached or not.
=========================================



=========================================
The start-up time of CASA may vary
depending on whether the shared libraries
are cached or not.
=========================================

=========================================
The start-up time of CASA may vary
depending on whether the shared libraries
are cached or not.
=========================================


=========================================
The start-up time of CASA may vary
depending on whether the shared libraries
are cached or not.
=========================================

IPython 5.1.0 -- An enhanced Interactive Python.

IPython 5.1.0 -- An enhanced Interactive Python.

IPython 5.1.0 -- An enhanced Interactive Python.

IPython 5.1.0 -- An enhanced Interactive Python.

CASA 5.3.0-122   -- Common Astronomy Software Applications

CASA 5.3.0-122   -- Common Astronomy Software Applications

CASA 5.3.0-122   -- Common Astronomy Software Applications

CASA 5.3.0-122   -- Common Astronomy Software Applications


________________________________________________________________________________
         ..............................................................

                  Thank you for using rPICARD v0.2.0-9-g8758686
                                        
                                        
           This program will automatically calibrate your VLBI datset
                                 - Make it so! - 
           **********************************************************




Got --input option:
Reading input from
../testing/input/


Reading input...
  Found 174 parameters
Done


Changing directories from
/home/michael/Software/Bitbucket_repos/Picard
to
/home/michael/Software/Bitbucket_repos/testing/input/../


Writing this run's diagnostics to
/home/michael/Software/Bitbucket_repos/testing/diagnostics_2018-06-28_13-15-19

Got -r option:
Will enfore to (re)store an initial flag version of the data.


Attaching Tsys values from
  /home/michael/Software/Bitbucket_repos/testing/input/../example.antab
to the (first) fits-idi file:
  /home/michael/Software/Bitbucket_repos/testing/input/../example_EVN.IDI1 ...
Done


Warning: No valid WX table found.
Any opacity attenuation calibration will fail.


Loading the data...
  The measurement set VLBI.ms already exists.
    I assume you want to work with the same measurement set again, 
    but probably with a different calibration strategy.
    Therefore, I will not load the fits-idi files again and keep the old MS.
Done


Restoring flags to initial version from
  VLBI.ms.flagversions/flags.init_flagversion...
Done


Writing listobs file to diagnostics_2018-06-28_13-15-19/list.obs...
Done


 -- Determining metadata collection from scratch --

Initializing metadata collection...
  Warning: There is a difference between all sources available
  and the ones specified as calibrators and science targets:
    set(['TXCAM', '3C273'])
  This either means you are not using all available sources
  or you specified sources which were not observed.
  Maybe due to a typo?
  In the former case the sources not specified will not be properly calibrated.
  In the latter case the code should exit with a ValueError now.
Done

  Using the following scans of the following sources for
  diagnostic plots, flagging, and maybe for trial and error fringe-fitting:
    [[('3C84', '1')],
    []]

Preparing DPFU and gain curve conversion file based on the ANTAB table
  /home/michael/Software/Bitbucket_repos/testing/input/../example.antab ...
Done


The pipeline will execute the following steps for the
EVN array in the given order:
   a : load models of observed sources (if present)
   b : use online flags from idi files (if present)
   c : use flags from metadata (if present)
   d : flag based on outlier detection from auto-correlations vs time
   e : flag based on outlier detection from auto-correlations vs frequency
   f : flag edge channels
   0 : task_tsys
   1 : task_scalar_bandpass
   2 : task_gaincurve
   3 : task_fringefit_solint_cal
   4 : task_fringefit_single
   5 : task_fringefit_multi_cal
   6 : task_complex_bandpass
   7 : task_fringefit_solint_sci
   8 : task_fringefit_multi_sci
   9 : task_rldelay
  10 : task_rlphase
  11 : task_dterms
   g : clear the calibrated data column of the MS from previous applycal runs
   h : apply all existing tables from all_calibration_steps
   i : print overview of flagged data (can be slow)
   j : make diagnostic plots of calibrated visibilities for selected baselines
   k : average and export the calibrated data
Can use quickmode [-q] to execute only a subset of these steps.

Got -q argument without a list specified:
Exiting now that I have shown the list of steps.

Changing directories from
/home/michael/Software/Bitbucket_repos/testing
to
/home/michael/Software/Bitbucket_repos/Picard


________________________________________________________________________________
                 ..............................................

                                  - FINISHED -
                            Now: Tea. Earl Grey. Hot.
                   Waiting for the MPI environment wrap-up...
                   ******************************************



