conda-forge/linux-64 Using cache conda-forge/noarch Using cache bioconda/linux-64 Using cache bioconda/noarch Using cache Transaction Prefix: /mbshome/idifazio/mambaforge/envs/bam2bigwig Updating specs: - deeptools - samtools Package Version Build Channel Size ──────────────────────────────────────────────────────────────────────────────────────────── Install: ──────────────────────────────────────────────────────────────────────────────────────────── + _libgcc_mutex 0.1 conda_forge conda-forge/linux-64 Cached + _openmp_mutex 4.5 2_gnu conda-forge/linux-64 Cached + brotli 1.0.9 h166bdaf_8 conda-forge/linux-64 Cached + brotli-bin 1.0.9 h166bdaf_8 conda-forge/linux-64 Cached + brotlipy 0.7.0 py310h5764c6d_1005 conda-forge/linux-64 Cached + bzip2 1.0.8 h7f98852_4 conda-forge/linux-64 Cached + c-ares 1.18.1 h7f98852_0 conda-forge/linux-64 Cached + ca-certificates 2022.12.7 ha878542_0 conda-forge/linux-64 Cached + certifi 2022.12.7 pyhd8ed1ab_0 conda-forge/noarch Cached + cffi 1.15.1 py310h255011f_3 conda-forge/linux-64 Cached + charset-normalizer 2.1.1 pyhd8ed1ab_0 conda-forge/noarch Cached + contourpy 1.0.7 py310hdf3cbec_0 conda-forge/linux-64 Cached + cryptography 39.0.0 py310h65dfdc0_0 conda-forge/linux-64 Cached + cycler 0.11.0 pyhd8ed1ab_0 conda-forge/noarch Cached + deeptools 3.5.1 pyhdfd78af_1 bioconda/noarch Cached + deeptoolsintervals 0.1.9 py310h1425a21_4 bioconda/linux-64 Cached + fonttools 4.38.0 py310h5764c6d_1 conda-forge/linux-64 Cached + freetype 2.12.1 hca18f0e_1 conda-forge/linux-64 Cached + htslib 1.16 h6bc39ce_0 bioconda/linux-64 Cached + idna 3.4 pyhd8ed1ab_0 conda-forge/noarch Cached + jpeg 9e h0b41bf4_3 conda-forge/linux-64 Cached + keyutils 1.6.1 h166bdaf_0 conda-forge/linux-64 Cached + kiwisolver 1.4.4 py310hbf28c38_1 conda-forge/linux-64 Cached + krb5 1.20.1 hf9c8cef_0 conda-forge/linux-64 Cached + lcms2 2.14 h6ed2654_0 conda-forge/linux-64 Cached + ld_impl_linux-64 2.40 h41732ed_0 conda-forge/linux-64 Cached + lerc 4.0.0 h27087fc_0 conda-forge/linux-64 Cached + libblas 3.9.0 16_linux64_openblas conda-forge/linux-64 Cached + libbrotlicommon 1.0.9 h166bdaf_8 conda-forge/linux-64 Cached + libbrotlidec 1.0.9 h166bdaf_8 conda-forge/linux-64 Cached + libbrotlienc 1.0.9 h166bdaf_8 conda-forge/linux-64 Cached + libcblas 3.9.0 16_linux64_openblas conda-forge/linux-64 Cached + libcurl 7.87.0 h6312ad2_0 conda-forge/linux-64 Cached + libdeflate 1.13 h166bdaf_0 conda-forge/linux-64 Cached + libedit 3.1.20191231 he28a2e2_2 conda-forge/linux-64 Cached + libev 4.33 h516909a_1 conda-forge/linux-64 Cached + libffi 3.4.2 h7f98852_5 conda-forge/linux-64 Cached + libgcc-ng 12.2.0 h65d4601_19 conda-forge/linux-64 Cached + libgfortran-ng 12.2.0 h69a702a_19 conda-forge/linux-64 Cached + libgfortran5 12.2.0 h337968e_19 conda-forge/linux-64 Cached + libgomp 12.2.0 h65d4601_19 conda-forge/linux-64 Cached + liblapack 3.9.0 16_linux64_openblas conda-forge/linux-64 Cached + libnghttp2 1.51.0 hdcd2b5c_0 conda-forge/linux-64 Cached + libnsl 2.0.0 h7f98852_0 conda-forge/linux-64 Cached + libopenblas 0.3.21 pthreads_h78a6416_3 conda-forge/linux-64 Cached + libpng 1.6.39 h753d276_0 conda-forge/linux-64 Cached + libsqlite 3.40.0 h753d276_0 conda-forge/linux-64 Cached + libssh2 1.10.0 haa6b8db_3 conda-forge/linux-64 Cached + libstdcxx-ng 12.2.0 h46fd767_19 conda-forge/linux-64 Cached + libtiff 4.4.0 h0e0dad5_3 conda-forge/linux-64 Cached + libuuid 2.32.1 h7f98852_1000 conda-forge/linux-64 Cached + libwebp-base 1.2.4 h166bdaf_0 conda-forge/linux-64 Cached + libxcb 1.13 h7f98852_1004 conda-forge/linux-64 Cached + libzlib 1.2.13 h166bdaf_4 conda-forge/linux-64 Cached + matplotlib-base 3.7.0 py310he60537e_0 conda-forge/linux-64 Cached + munkres 1.1.4 pyh9f0ad1d_0 conda-forge/noarch Cached + ncurses 6.3 h27087fc_1 conda-forge/linux-64 Cached + numpy 1.23.5 py310h53a5b5f_0 conda-forge/linux-64 Cached + openjpeg 2.5.0 h7d73246_1 conda-forge/linux-64 Cached + openssl 1.1.1t h0b41bf4_0 conda-forge/linux-64 Cached + packaging 23.0 pyhd8ed1ab_0 conda-forge/noarch Cached + pillow 9.2.0 py310h454ad03_3 conda-forge/linux-64 Cached + pip 23.0.1 pyhd8ed1ab_0 conda-forge/noarch Cached + platformdirs 3.0.0 pyhd8ed1ab_0 conda-forge/noarch Cached + plotly 5.13.1 pyhd8ed1ab_0 conda-forge/noarch Cached + pooch 1.7.0 pyhd8ed1ab_0 conda-forge/noarch Cached + pthread-stubs 0.4 h36c2ea0_1001 conda-forge/linux-64 Cached + py2bit 0.3.0 py310h1425a21_6 bioconda/linux-64 Cached + pybigwig 0.3.18 py310h722e95c_2 bioconda/linux-64 Cached + pycparser 2.21 pyhd8ed1ab_0 conda-forge/noarch Cached + pyopenssl 23.0.0 pyhd8ed1ab_0 conda-forge/noarch Cached + pyparsing 3.0.9 pyhd8ed1ab_0 conda-forge/noarch Cached + pysam 0.20.0 py310hff46b53_0 bioconda/linux-64 Cached + pysocks 1.7.1 pyha2e5f31_6 conda-forge/noarch Cached + python 3.10.8 h257c98d_0_cpython conda-forge/linux-64 Cached + python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge/noarch Cached + python_abi 3.10 3_cp310 conda-forge/linux-64 Cached + readline 8.1.2 h0f457ee_0 conda-forge/linux-64 Cached + requests 2.28.2 pyhd8ed1ab_0 conda-forge/noarch Cached + samtools 1.16.1 h6899075_1 bioconda/linux-64 Cached + scipy 1.10.1 py310h8deb116_0 conda-forge/linux-64 Cached + setuptools 67.4.0 pyhd8ed1ab_0 conda-forge/noarch Cached + six 1.16.0 pyh6c4a22f_0 conda-forge/noarch Cached + tenacity 8.2.2 pyhd8ed1ab_0 conda-forge/noarch Cached + tk 8.6.12 h27826a3_0 conda-forge/linux-64 Cached + typing-extensions 4.4.0 hd8ed1ab_0 conda-forge/noarch Cached + typing_extensions 4.4.0 pyha770c72_0 conda-forge/noarch Cached + tzdata 2022g h191b570_0 conda-forge/noarch Cached + unicodedata2 15.0.0 py310h5764c6d_0 conda-forge/linux-64 Cached + urllib3 1.26.14 pyhd8ed1ab_0 conda-forge/noarch Cached + wheel 0.38.4 pyhd8ed1ab_0 conda-forge/noarch Cached + xorg-libxau 1.0.9 h7f98852_0 conda-forge/linux-64 Cached + xorg-libxdmcp 1.1.3 h7f98852_0 conda-forge/linux-64 Cached + xz 5.2.6 h166bdaf_0 conda-forge/linux-64 Cached + zlib 1.2.13 h166bdaf_4 conda-forge/linux-64 Cached + zstd 1.5.2 h3eb15da_6 conda-forge/linux-64 Cached Summary: Install: 96 packages Total download: 0 B ──────────────────────────────────────────────────────────────────────────────────────────── Looking for: ['deeptools', 'samtools'] Downloading and Extracting Packages Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done To activate this environment, use $ mamba activate bam2bigwig To deactivate an active environment, use $ mamba deactivate Converting wgEncodeUwRepliSeqK562S2AlnRep1.bam... Creating index... Converting to bw... bamFilesList: ['/vol/ftp/pub/GenomeBrowser/bash_course/final_idifazio/wgEncodeUwRepliSeqK562S2AlnRep1.bam'] binLength: 50 numberOfSamples: None blackListFileName: None skipZeroOverZero: False bed_and_bin: False genomeChunkSize: None defaultFragmentLength: read length numberOfProcessors: 1 verbose: False region: None bedFile: None minMappingQuality: None ignoreDuplicates: False chrsToSkip: [] stepSize: 50 center_read: False samFlag_include: None samFlag_exclude: None minFragmentLength: 0 maxFragmentLength: 0 zerosToNans: False smoothLength: None save_data: False out_file_for_raw_data: None maxPairedFragmentLength: 1000 Converting wgEncodeUwRepliSeqK562S3AlnRep1.bam... Creating index... Converting to bw... bamFilesList: ['/vol/ftp/pub/GenomeBrowser/bash_course/final_idifazio/wgEncodeUwRepliSeqK562S3AlnRep1.bam'] binLength: 50 numberOfSamples: None blackListFileName: None skipZeroOverZero: False bed_and_bin: False genomeChunkSize: None defaultFragmentLength: read length numberOfProcessors: 1 verbose: False region: None bedFile: None minMappingQuality: None ignoreDuplicates: False chrsToSkip: [] stepSize: 50 center_read: False samFlag_include: None samFlag_exclude: None minFragmentLength: 0 maxFragmentLength: 0 zerosToNans: False smoothLength: None save_data: False out_file_for_raw_data: None maxPairedFragmentLength: 1000 Converting wgEncodeUwRepliSeqK562S4AlnRep1.bam... Creating index... Converting to bw... bamFilesList: ['/vol/ftp/pub/GenomeBrowser/bash_course/final_idifazio/wgEncodeUwRepliSeqK562S4AlnRep1.bam'] binLength: 50 numberOfSamples: None blackListFileName: None skipZeroOverZero: False bed_and_bin: False genomeChunkSize: None defaultFragmentLength: read length numberOfProcessors: 1 verbose: False region: None bedFile: None minMappingQuality: None ignoreDuplicates: False chrsToSkip: [] stepSize: 50 center_read: False samFlag_include: None samFlag_exclude: None minFragmentLength: 0 maxFragmentLength: 0 zerosToNans: False smoothLength: None save_data: False out_file_for_raw_data: None maxPairedFragmentLength: 1000